Publications


1.    Inverse Problem of Ultrasound Beamforming with Sparsity in Time and Frequency Domain.
Ozkan, Ece; Goksel, Orcun. 2016. 2016 IEEE International Ultrasonics Symposium (IUS).
 
2.    Compliance Boundary Conditions for Elasticity Reconstruction Using FEM Inverse Problem.
Ozkan, Ece; Goksel, Orcun. 2016. Proceedings of International Tissue Elasticity Conference.
 
3.    Automatic Segmentation of Abdominal MRI Using Selective Sampling and Random Walker.
Thoma, Janine; Ozdemir, Firat; Goksel, Orcun. 2016. MICCAI Workshop on Medical Computer Vision (MCV).
 
4.    Compliance Boundary Conditions for Simulating Deformations in a Limited Target Region.
Ozkan, Ece; Goksel, Orcun. 2015. 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
 
5.    Consistency-based rectification of nonrigid registrations.
Gass, Tobias; Szekely, Gabor; Goksel, Orcun. 2015. SPIE Journal of Medical Imaging.
 
6.    Scatterer Reconstruction and Parametrization of Homogeneous Tissue for Ultrasound Image Simulation.
Mattausch, Oliver; Göksel, Orçun. 2015. 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
 
7.    Motion Tracking in 2D Ultrasound Using Vessel Models and Robust Optic-Flow.
Makhinya, Maxim; Goksel, Orcun. 2015. Proceedings of the MICCAI 2015 workshop.
 
8.    Total-Variation Regularization of Hand-held Limited-Angle Sound-Speed Tomography Based on Coherent Reflector for Breast Cancer Detection.
Sanabria, Sergio J.; Goksel, Orcun. 2015. Proceedings of International Tissue Elasticity Conference (ITEC).
 
9.    Graphical Modeling of Ultrasound Propagation in Tissue for Automatic Bone Segmentation.
Ozdemir, Firat; Ozkan, Ece; Goksel, Orcun. 2016. MICCAI 2016: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016.
 
10.    Image-based PSF Estimation for Ultrasound Training Simulation.
Mattausch, Oliver; Goksel, Orcun. 2016. Simulation and Synthesis in Medical Imaging: First International Workshop, SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings.
 
11.    Imaging of sliding visceral interfaces during breathing.
Goksel, Orcun; Vishnevsky, Valery; Gomariz Carrillo, Álvaro; Tanner, Christine. 2016. 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).
 
12.    Monte-Carlo Ray-Tracing for Realistic Interactive Ultrasound Simulation.
Mattausch, Oliver; Goksel, Orcun. 2016. VCBM 16 : Eurographics Workshop on Visual Computing for Biology and Medicine.
 
13.    Hand-held Sound-speed Imaging for the Reconstruction of Bulk Modulus and Poisson Ratio in a Commercial Tissue-Mimicking Phantom.
Sergio, Sanabria J.; Otesteanu, Corin F.; Goksel, Orcun. 2015. Proceedings of the International Tissue Elasticity Conference (ITEC).
 
14.    Comparative Study of Texture Synthesis for Content Generation in Ultrasound Training Simulation.
Mattausch, Oliver; Vanhoey, Kenneth; Goksel, Orcun. 2017.
 
15.    Low Cost Alternative for Ultrasound Harmonic Elastography.
Otesteanu, Corin F.; Sanabria, Sergio J.; Goksel, Orcun. 2016. Proceedings of the Fifteenth International Tissue Elasticity Conference™.
 
16.    Model-based compensation of tissue deformation during data acquisition for interpolative ultrasound simulation.
Flach, Barbara; Makhinya, Maxim; Goksel, Orcun. 2016. 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).
 
17.    Analysis of excitation frequency in elasticity reconstruction using the FEM inverse-problem.
Otesteanu, Corin F.; Sanabria, Sergio J.; Goksel, Orcun. 2016. 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).
 
18.    Real-time Tracking of Liver Landmarks in 2D Ultrasound Sequences.
Makhinya, Maxim; Göksel, Orçun. 2015. 4D Treatment Planning (4DTP) Workshop 2015: 7th International Workshop for Planning and Delivery of Radiotherapy to Non-static Targets.
 
19.    Hand-held Sound-Speed Mammography Based on Ultrasound Reflector Tracking.
Sanabria, Sergio J.; Goksel, Orcun. 2016. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part I.
 
20.    Computational Support for Intraoperative Imaging and IGT.
Göksel, Orçun; Székely, Gábor. 2014. Intraoperative Imaging and Image-Guided Therapy.
 
21.    Simultaneous Segmentation and Multiresolution Nonrigid Atlas Registration.
Gass, Tobias; Székely, Gábor; Goksel, Orcun. 2014. IEEE transactions on image processing.
 
22.    Consistent Dense Correspondences from Pair-Wise Non-Rigid Registration.
Gass, Tobias; Székely, Gábor; Goksel, Orcun. 2014. Symposium on Statistical Shape Models & Applications, June 11-13 2014, Delémont, Switzerland: Proceedings.
 
23.    Automatic Measurement of Venous Pressure Using B-Mode Ultrasound.
Crimi, Alessandro; Makhinya, Maxim; Baumann, Ulrich; Thalhammer, Christoph; Szekely, Gabor; Goksel, Orcun. 2016. IEEE Transactions on Biomedical Engineering.
 
24.    PURE: Panoramic ultrasound reconstruction by seamless stitching of volumes.
Flach, Barbara; Makhinya, Maxim; Goksel, Orcun. 2016. Simulation and Synthesis in Medical Imaging: First International Workshop, SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings.
 
25.    Vessel tracking for Ultrasound-based venous pressure measurement.
Crimi, Alessandro; Makhinya, Maxim; Baumann, Ulrich; Szekely, Gabor; Goksel, Orcun. 2014. IEEE International Symposium on Biomedical Imaging (ISBI).
 
26.    Non-Linear Characterization of the Liver by Combining Shear and Longitudinal Wave Speed With Strain Observations.
Sanabria, Sergio J.; Rominger, Marga; Otesteanu, Corin F.; Mazza, Edoardo; Goksel, Orcun. 2016. Proceedings of the Fifteenth International Tissue Elasticity Conference.
 
27.    Auxiliary Anatomical Labels for Joint Segmentation and Atlas Registration.
Gass, Tobias; Szekely, Gabor; Goksel, Orcun. 2014. Medical Imaging 2014: Image Processing.
 
28.    Isotropic Total Variation Regularization of Displacements in Parametric Image Registration.
Vishnevskiy, Valery; Gass, Tobias; Szekely, Gabor; Tanner, Christine; Goksel, Orcun. 2017. IEEE Transactions on Medical Imaging.
 
29.    Computer algorithms for three-dimensional measurement of humeral anatomy: analysis of 140 paired humeri.
Vlachopoulos, Lazaros; Dünner, Celestine; Gass, Tobias; Graf, Matthias; Goksel, Orcun; Gerber, Christian; Gabor, Szekely; Fuernstahl, Philipp. 2016. Journal of Shoulder and Elbow Surgery.
 
30.    Surgical Treatment of Long-Bone Deformities: 3D Preoperative Planning and Patient-Specific Instrumentation.
Fürnstahl, Philipp; Schweizer, Andreas; Graf, Matthias; Vlachopoulos, Lazaros; Fucentese, Sandro; Wirth, Stephan; Nagy, Ladislav; Székely, Gábor; Goksel, Orcun. 2016. Computational Radiology for Orthopaedic Interventions.
 
31.    Temporal prediction of respiratory motion using a trained ensemble of forecasting methods.
Chen, Xiaoran; Tanner, Christine; Göksel, Orçun; Székely, Gábor; Luca, Valeria De. 2016. Medical Imaging and Augmented Reality: 7th International Conference, MIAR 2016, Bern, Switzerland, August 24-26, 2016, Proceedings.
 
32.    Thermal expansion imaging for monitoring lesion depth using M-mode ultrasound during cardiac RF ablation: in vitro study.
Baki, Péter; Sanabria, Sergio J.; Kósa, Gábor; Székely, Gábor; Goksel, Orcun. 2015. International Journal of Computer Assisted Radiology and Surgery.
 
33.    Total Variation Regularization of Displacements in Parametric Image Registration.
Vishnevskiy, Valeriy; Gass, Tobias; Székely, Gábor; Goksel, Orcun. 2014. Abdominal Imaging. Computational Clinical Applications.
 
34.    Detection and Correction of Inconsistency-based Errors in Non-Rigid Registration.
Gass, Tobias; Szekely, Gabor; Goksel, Orcun. 2014. Medical Imaging 2014 - Image Processing.
 
35.    4D reconstruction of fetal heart ultrasound images in presence of fetal motion.
Tanner, Christine; Eggenberger, Celine; Flach, Barbara; Mattausch, Oliver; Bajka, Michael; Goksel, Orcun. 2016. LinkMedical image computing and computer-assisted intervention - MICCAI 2016 : 19th International Conference, Athens, Greece, October 17-21, 2016, proceedings.
 
36.    Registration Fusion Using Markov Random Fields.
Gass, Tobias; Székely, Gábor; Goksel, Orcun. 2014. Biomedical Image Registration : 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings.
 
37.    Multi-Atlas Segmentation and Landmark Localization in Images with large Fields of View.
Gass, Tobias; Székely, Gábor; Goksel, Orcun. 2014. Lecture notes in computer science.
 
38.    Unsupervised detection of local errors in image registration.
Vishnevskiy, Valeriy; Gass, Tobias; Székel, Gábor; Tanner, Christine; Goksel, Orcun. 2015. 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015) : Brooklyn, New York, USA, 16 - 19 April 2015.
 
39.    Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions.
Khallaghi, Siavash; Sánchez, C. Antonio; Rasoulian, Abtin; Sun, Yue; Imani, Farhad; Khojaste, Amir; Goksel, Orcun; Romagnoli, Cesare; Abdi, Hamidreza; Chang, Silvia; Mousavi, Parvin; Fenster, Aaron; Ward, Aaron; Fels, Sidney; Abolmaesumi, Purang. 2015. IEEE Transactions on Medical Imaging.
 
40.    Mobile Ultrasound Imaging on Heterogeneous Multi-Core Platforms.
Kurth, Andreas D.; Tretter, Andreas; Hager, Pascal; Sanabria, Sergio; Göksel, Orcun; Thiele, Lothar; Benini, Luca. 2016. Proceedings of the 14th ACM/IEEE Symposium on Embedded Systems for Real-Time Multimedia.
 
41.    Required transition from research to clinical application: Report on the 4D treatment planning workshops 2014 and 2015.
Knopf, Antje-Christin; Stuetzer, Kristin; Richter, Christian; Rucinski, Antoni; da Silva, Joakim; Phillips, Justin; Engelsman, Martijn; Shimizu, Shinichi; Werner, Rene; Jakobi, Annika; Goksel, Orcun; Zhang, Ye; Oshea, Tuathan; Fast, Martin; Perrin, Rosalind; Bert, Christoph; Rinaldi, Ilaria; Korevaar, Erik; McClelland, Jamie. 2016. Physica Medica.
 
42.    VISCERAL - VISual Concept Extraction challenge in RAdioLogy: ISBI 2014 Challenge Organization.
Toro, Oscar Alfonso Jiménez del; Goksel, Orcun; Menzel, Bjoern; Müller, Henning; Langs, Georg; Weber, Marc-André; Eggel, Ivan; Gruenberg, Katharina; Holzer, Markus; Jakab, András; Kotsios-Kontokotsios, Georgios; Krenn, Markus; Fernandez, Tomàs Salas; Schaer, Roger; Taha, Abdel Aziz; Winterstein, Marianne; Hanbury, Allan. 2014. VISCERAL Challenge at ISBI 2014.
 
43.    Overview of the VISCERAL Challenge at ISBI 2015.
Göksel, Orçun; Foncubierta-Rodríguez, Antonio; Jimenez del Toro, Oscar A.; Müller, Henning; Langs, Georg; Weber, Marc-Andre; Menze, Bjoern; Eggel, Ivan; Grünberg, Katharina; Winterstein, Marianne; Holzer, Markus; Krenn, Markus; Kontokotsios, Georgios; Metallidis, Sokratis; Schär, Roger; Taha, Abdel Aziz; Jakab, Andras; Fernandez, Tomàs S.; Hanbury, Allan. 2015. VISCERAL 2015: Proceedings of the VISCERAL Anatomy3 Organ Segmentation Challenge co-located with IEEE International Symposium on Biomedical Imaging (ISBI 2015).
 
44.    Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks.
Jimenez-Del-Toro, Oscar; Müller, Henning; Krenn, Markus; Gruenberg, Katharina; Taha, Abdel A.; Winterstein, Marianne; Eggel, Ivan; Foncubierta-Rodríguez, Antonio; Goksel, Orcun; Jakab, András; Kontokotsios, Georgios; Langs, Georg; Menze, Björn; Salas Fernandez, Tomàs; Schaer, Roger; Walleyo, Anna; Weber, Marc-André; Dicente Cid, Yashin; Gass, Tobias; Heinrich, Mattias; Jia, Fucang; Kahl, Fredrik; Kechichian, Razmig; Mai, Dominic; Spanier, Assaf B.; Vincent, Graham; Wang, Chunliang; Wyeth, Daniel; Hanbury, Allan. 2016. IEEE Transactions on Medical Imaging.